nf-core_modules/modules/sequenzautils/gcwiggle/meta.yml

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name: sequenzautils_gcwiggle
description: Sequenza-utils gc_wiggle computes the GC percentage across the sequences, and returns a file in the UCSC wiggle format, given a fasta file and a window size.
keywords:
- gc_wiggle
tools:
- sequenzautils:
description: Sequenza-utils provides 3 main command line programs to transform common NGS file format - such as FASTA, BAM - to input files for the Sequenza R package. The program -gc_wiggle- takes fasta file as an input, computes GC percentage across the sequences and returns a file in the UCSC wiggle format.
homepage: https://sequenza-utils.readthedocs.io/en/latest/index.html
documentation: https://sequenza-utils.readthedocs.io/en/latest/index.html
doi: 10.1093/annonc/mdu479
licence: ['GPL-3.0-or-later']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- fasta:
type: file
description: FASTA file
pattern: "*.{fasta}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- wig:
type: file
description: GC Wiggle track file
pattern: "*.{wig.gz}"
authors:
- "@kaurravneet4123"