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nf-core_modules/tests/modules/antismash/antismashlitedownloaddatabases/test.yml

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Antismashlite download databases (#1426) * Create module antismashlitedownloaddatabases * Corrected user-specification of database directory * Updated test.yml * Apply suggestions from code review Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Fix typo in test.yml * Feed database files via docker/singularity mount) * Add external db file mounts to the containers * Fixed docker command in main.nf * Apply prettier * Apply prettier and add PWD * Add more output to test.yml * Add more output paths to test.yml * Fixed test.yml * Apply suggestions from code review Add documentation of why we need to mount files to the containers. Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Fix code linting errors (remove trailing whitespaces) * Fix code linting error (remove trailing whitespace) * Fix errors from Prettier linting Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-04-21 08:38:17 +00:00
- name: antismash antismashlitedownloaddatabases test_antismash_antismashlitedownloaddatabases
command: nextflow run tests/modules/antismash/antismashlitedownloaddatabases -entry test_antismash_antismashlitedownloaddatabases -c tests/config/nextflow.config
tags:
- antismash
Add missing container folders as output channels
2022-04-26 15:04:57 +00:00
- antismash/antismashlitedownloaddatabases
Antismashlite download databases (#1426) * Create module antismashlitedownloaddatabases * Corrected user-specification of database directory * Updated test.yml * Apply suggestions from code review Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Fix typo in test.yml * Feed database files via docker/singularity mount) * Add external db file mounts to the containers * Fixed docker command in main.nf * Apply prettier * Apply prettier and add PWD * Add more output to test.yml * Add more output paths to test.yml * Fixed test.yml * Apply suggestions from code review Add documentation of why we need to mount files to the containers. Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Fix code linting errors (remove trailing whitespaces) * Fix code linting error (remove trailing whitespace) * Fix errors from Prettier linting Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-04-21 08:38:17 +00:00
files:
- path: output/antismash/versions.yml
md5sum: e2656c8d2bcc7469eba40eb1ee5c91b3
Add missing container folders as output channels
2022-04-26 15:04:57 +00:00
- path: output/untar1/versions.yml
md5sum: b724089c7a3b22557626e3d6cf79884d
- path: output/untar2/versions.yml
md5sum: 7182a024e050e5fb6b8830930e551adc
- path: output/untar3/versions.yml
md5sum: d27a9b44dd969d74d237e52ac89bd8e5
Antismashlite download databases (#1426) * Create module antismashlitedownloaddatabases * Corrected user-specification of database directory * Updated test.yml * Apply suggestions from code review Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Fix typo in test.yml * Feed database files via docker/singularity mount) * Add external db file mounts to the containers * Fixed docker command in main.nf * Apply prettier * Apply prettier and add PWD * Add more output to test.yml * Add more output paths to test.yml * Fixed test.yml * Apply suggestions from code review Add documentation of why we need to mount files to the containers. Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Fix code linting errors (remove trailing whitespaces) * Fix code linting error (remove trailing whitespace) * Fix errors from Prettier linting Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-04-21 08:38:17 +00:00
- path: output/antismash/antismash_db
- path: output/antismash/antismash_db/clusterblast
- path: output/antismash/antismash_db/clustercompare
- path: output/antismash/antismash_db/pfam
- path: output/antismash/antismash_db/resfam
- path: output/antismash/antismash_db/tigrfam
Add missing container folders as output channels
2022-04-26 15:04:57 +00:00
- path: output/antismash/css
- path: output/antismash/detection
- path: output/antismash/modules
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