mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 03:28:17 +00:00
40 lines
1.6 KiB
YAML
40 lines
1.6 KiB
YAML
|
# We can't use an md5sum or check file contents because:
|
||
|
|
# a) the path to the file is embedded inside it,
|
||
|
|
# b) the file is binary so we can't check for text inside it.
|
||
|
|
- name: gatk4 indexfeaturefile test_gatk4_indexfeaturefile_bed
|
||
|
|
command: nextflow run tests/modules/gatk4/indexfeaturefile -entry test_gatk4_indexfeaturefile_bed -c tests/config/nextflow.config
|
||
|
|
tags:
|
||
|
|
- gatk4
|
||
|
|
- gatk4/indexfeaturefile
|
||
|
|
files:
|
||
|
|
- path: output/gatk4/genome.bed.idx
|
||
|
|
|
||
|
|
- name: gatk4 indexfeaturefile test_gatk4_indexfeaturefile_bed_gz
|
||
|
|
command: nextflow run tests/modules/gatk4/indexfeaturefile -entry test_gatk4_indexfeaturefile_bed_gz -c tests/config/nextflow.config
|
||
|
|
tags:
|
||
|
|
- gatk4
|
||
|
|
- gatk4/indexfeaturefile
|
||
|
|
files:
|
||
|
|
- path: output/gatk4/genome.bed.gz.tbi
|
||
|
|
md5sum: 2eb6ed0a0b049efe4caa1413089dcd74
|
||
|
|
|
||
|
|
# We can't use an md5sum or check file contents because:
|
||
|
|
# a) the path to the file is embedded inside it,
|
||
|
|
# b) the file is binary so we can't check for text inside it.
|
||
|
|
- name: gatk4 indexfeaturefile test_gatk4_indexfeaturefile_vcf
|
||
|
|
command: nextflow run tests/modules/gatk4/indexfeaturefile -entry test_gatk4_indexfeaturefile_vcf -c tests/config/nextflow.config
|
||
|
|
tags:
|
||
|
|
- gatk4
|
||
|
|
- gatk4/indexfeaturefile
|
||
|
|
files:
|
||
|
|
- path: output/gatk4/test.genome.vcf.idx
|
||
|
|
|
||
|
|
- name: gatk4 indexfeaturefile test_gatk4_indexfeaturefile_vcf_gz
|
||
|
|
command: nextflow run tests/modules/gatk4/indexfeaturefile -entry test_gatk4_indexfeaturefile_vcf_gz -c tests/config/nextflow.config
|
||
|
|
tags:
|
||
|
|
- gatk4
|
||
|
|
- gatk4/indexfeaturefile
|
||
|
|
files:
|
||
|
|
- path: output/gatk4/test.genome.vcf.gz.tbi
|
||
|
|
md5sum: ea03cd1d1f178eefa656787537053c37
|