mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 13:43:09 +00:00
33 lines
1.1 KiB
YAML
33 lines
1.1 KiB
YAML
|
- name: Run bwa index
|
||
|
|
command: nextflow run ./tests/software/bwa -profile docker -entry test_bwa_index -c tests/config/nextflow.config
|
||
|
|
tags:
|
||
|
|
- bwa
|
||
|
|
- bwa_index
|
||
|
|
files:
|
||
|
|
- path: output/bwa/NC_010473.fa.amb
|
||
|
|
md5sum: 942a990ae872f1c0b8d72dda2db405d5
|
||
|
|
- path: output/bwa/NC_010473.fa.bwt
|
||
|
|
md5sum: 7301b52e2ecb893d429a49fa692447ae
|
||
|
|
- path: output/bwa/NC_010473.fa.pac
|
||
|
|
md5sum: 4d5e6fc45bbc968f7f859e9ca2cc89ad
|
||
|
|
- path: output/bwa/NC_010473.fa.sa
|
||
|
|
md5sum: a47dcc92e750e2f16fbd979b8ff9538e
|
||
|
|
|
||
|
|
- name: Run bwa mem single-end
|
||
|
|
command: nextflow run ./tests/software/bwa -profile docker -entry test_bwa_mem_single_end -c tests/config/nextflow.config
|
||
|
|
tags:
|
||
|
|
- bwa
|
||
|
|
- bwa_mem
|
||
|
|
files:
|
||
|
|
- path: output/test_single_end/test.bam
|
||
|
|
md5sum: 3ee21210bac387e0335008146e4728bc
|
||
|
|
|
||
|
|
- name: Run bwa mem paired-end
|
||
|
|
command: nextflow run ./tests/software/bwa -profile docker -entry test_bwa_mem_paired_end -c tests/config/nextflow.config
|
||
|
|
tags:
|
||
|
|
- bwa
|
||
|
|
- bwa_mem
|
||
|
|
files:
|
||
|
|
- path: output/test_paired_end/test.bam
|
||
|
|
md5sum: 510d8acc6448c07cdacce8e64ec0904c
|