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43 lines
1.1 KiB
YAML
43 lines
1.1 KiB
YAML
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name: legsta
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description: Typing of clinical and environmental isolates of Legionella pneumophila
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keywords:
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- bacteria
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- legionella
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tools:
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- legsta:
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description: In silico Legionella pneumophila Sequence Based Typing
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homepage: https://github.com/tseemann/legsta
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documentation: https://github.com/tseemann/legsta
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tool_dev_url: https://github.com/tseemann/legsta
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doi: ""
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licence: ['GPL v3']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- seqs:
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type: file
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description: FASTA, GenBank or EMBL formatted files
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pattern: "*.{fasta,gbk,embl}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- tsv:
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type: file
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description: Tab-delimited summary of the results
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pattern: "*.{tsv}"
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authors:
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- "@rpetit3"
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