mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 11:38:17 +00:00
16 lines
438 B
Text
16 lines
438 B
Text
|
#!/usr/bin/env nextflow
|
||
|
|
|
||
|
|
nextflow.enable.dsl = 2
|
||
|
|
|
||
|
|
include '../../../../tests/functions/check_process_outputs.nf' params(params)
|
||
|
|
include '../main.nf' params(params)
|
||
|
|
|
||
|
|
reads = '../../../../test-datasets/tools/bwa/mem/reads/*_R{1,2}_001.fastq.gz'
|
||
|
|
index = '../../../../test-datasets/tools/bwa/mem/index/H3N2.{amb,ann,bwt,pac,sa}'
|
||
|
|
prefix = 'H3N2'
|
||
|
|
|
||
|
|
workflow {
|
||
|
|
read_input=Channel.fromFilePairs(reads)
|
||
|
|
bwa_mem(read_input,file(index),prefix)
|
||
|
|
}
|