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nf-core_modules/tests/software/fastqc/test.yml

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test(fastqc): Use -entry to speed up tests `--wt, --workflow-threads` is now an option and can be used to run tests simultaneously.
2020-11-16 19:41:59 +00:00
- name: Run fastqc single-end test workflow
test(fastqc): restructure under software/fastqc Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2020-11-24 21:30:51 +00:00
command: nextflow run ./tests/software/fastqc/ -profile docker -entry test_single_end -c tests/config/nextflow.config
test(fastqc): Add initial pytest-workflow
2020-11-16 15:35:01 +00:00
tags:
- fastqc
test(fastqc): Add expected files and md5sums The md5 sums change for the zip files every run so it's difficult to hit a moving target.
2020-11-16 16:20:29 +00:00
files:
- path: output/test_single_end/test_fastqc.html
- path: output/test_single_end/test_fastqc.zip
test(fastqc): Use -entry to speed up tests `--wt, --workflow-threads` is now an option and can be used to run tests simultaneously.
2020-11-16 19:41:59 +00:00
- name: Run fastqc paired-end test workflow
test(fastqc): restructure under software/fastqc Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2020-11-24 21:30:51 +00:00
command: nextflow run ./tests/software/fastqc/ -profile docker -entry test_paired_end -c tests/config/nextflow.config
test(fastqc): Use -entry to speed up tests `--wt, --workflow-threads` is now an option and can be used to run tests simultaneously.
2020-11-16 19:41:59 +00:00
tags:
- fastqc
files:
test(fastqc): Add expected files and md5sums The md5 sums change for the zip files every run so it's difficult to hit a moving target.
2020-11-16 16:20:29 +00:00
- path: output/test_paired_end/test_1_fastqc.html
- path: output/test_paired_end/test_2_fastqc.html
- path: output/test_paired_end/test_1_fastqc.zip
- path: output/test_paired_end/test_2_fastqc.zip
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