nf-core_modules/modules/pairtools/dedup/meta.yml

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name: pairtools_dedup
description: Find and remove PCR/optical duplicates
keywords:
- dedup
tools:
- pairtools:
description: CLI tools to process mapped Hi-C data
homepage: http://pairtools.readthedocs.io/
documentation: http://pairtools.readthedocs.io/
tool_dev_url: https://github.com/mirnylab/pairtools
doi: ""
licence: ['MIT']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- input:
type: file
description: pair file
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- pairs:
type: file
description: Duplicates removed pairs
pattern: "*.{pairs.gz}"
- stat:
type: file
description: stats of the pairs
pattern: "*.{pairs.stat}"
authors:
- "@jianhong"