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15 lines
505 B
Text
15 lines
505 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { GENMAP_INDEX } from '../../../../software/genmap/index/main.nf' addParams( options: [:] )
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include { GENMAP_MAPPABILITY } from '../../../../software/genmap/mappability/main.nf' addParams( options: [args : '-K 50 -E 2 -w -t -bg'] )
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workflow test_genmap_map {
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input = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
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GENMAP_INDEX ( input )
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GENMAP_MAPPABILITY ( GENMAP_INDEX.out.index )
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}
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