nf-core_modules/tests/modules/genmap/index/main.nf

#!/usr/bin/env nextflow

nextflow.enable.dsl = 2

include { GENMAP_INDEX } from '../../../../modules/genmap/index/main.nf' addParams( options: [:] )

workflow test_genmap_index {

    input = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)

    GENMAP_INDEX ( input )
}
add genmap/mappability (#509) * add genmap/mappability * Add index module. Remove -w parameter from mappability module. * change the output of genmap/index * fix the lint error which can not handle stageAs. * Apply suggestions from code review * Update main.nf * Update test.yml * Update main.nf * Update test.yml * Update tests/software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-05-25 17:12:10 -04:00			`#!/usr/bin/env nextflow`

			`nextflow.enable.dsl = 2`

Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml 2021-07-07 05:10:18 -04:00			`include { GENMAP_INDEX } from '../../../../modules/genmap/index/main.nf' addParams( options: [:] )`
add genmap/mappability (#509) * add genmap/mappability * Add index module. Remove -w parameter from mappability module. * change the output of genmap/index * fix the lint error which can not handle stageAs. * Apply suggestions from code review * Update main.nf * Update test.yml * Update main.nf * Update test.yml * Update tests/software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-05-25 17:12:10 -04:00
			`workflow test_genmap_index {`

			`input = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)`

			`GENMAP_INDEX ( input )`
			`}`