nf-core_modules/tests/modules/star/genomegenerate/test.yml

- name: star genomegenerate
  command: nextflow run ./tests/modules/star/genomegenerate -entry test_star_genomegenerate -c tests/config/nextflow.config
  tags:
    - star
    - star/genomegenerate
  files:
    - path: ./output/index/star/Genome
      md5sum: 323c992bac354f93073ce0fc43f222f8
    - path: ./output/index/star/SA
      md5sum: 3e70e4fc6d031e1915bb510727f2c559
    - path: ./output/index/star/SAindex
      md5sum: a94198b95a245d4f64af2a7133b6ec7b
    - path: ./output/index/star/chrLength.txt
      md5sum: f2bea3725fe1c01420c57fb73bdeb31a
    - path: ./output/index/star/chrNameLength.txt
      md5sum: c7ceb0a8827b2ea91c386933bee48742
    - path: ./output/index/star/chrStart.txt
      md5sum: faf5c55020c99eceeef3e34188ac0d2f
    - path: ./output/index/star/exonGeTrInfo.tab
      md5sum: aec6e7a1ae3fc8c638ce5a9ce9c886b6
    - path: ./output/index/star/exonInfo.tab
      md5sum: 42eca6ebc2dc72d9d6e6b3acd3714343
    - path: ./output/index/star/sjdbInfo.txt
      md5sum: 1082ab459363b3f2f7aabcef0979c1ed
    - path: ./output/index/star/sjdbList.fromGTF.out.tab
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: ./output/index/star/sjdbList.out.tab
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: ./output/index/star/transcriptInfo.tab
      md5sum: 8fbe69abbbef4f89da3854873984dbac
    - path: ./output/index/star/genomeParameters.txt
Restructure tests to run individually for each module 2021-02-03 16:02:58 +00:00			`- name: star genomegenerate`
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml 2021-07-07 09:10:18 +00:00			`command: nextflow run ./tests/modules/star/genomegenerate -entry test_star_genomegenerate -c tests/config/nextflow.config`
Restructure tests to run individually for each module 2021-02-03 16:02:58 +00:00			`tags:`
			`- star`
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-04-08 08:10:52 +00:00			`- star/genomegenerate`
Restructure tests to run individually for each module 2021-02-03 16:02:58 +00:00			`files:`
Add default output dir for modules that create indices, updated (#336) * Add default output dir for modules that create indices * Change path for index module test output * Fix bowtie2/align tests * Fixing bowtie/align tests * Fix genomegenerate test * Fixing README linting 2021-03-23 17:55:01 +00:00			`- path: ./output/index/star/Genome`
Restructure tests to run individually for each module 2021-02-03 16:02:58 +00:00			`md5sum: 323c992bac354f93073ce0fc43f222f8`
Add default output dir for modules that create indices, updated (#336) * Add default output dir for modules that create indices * Change path for index module test output * Fix bowtie2/align tests * Fixing bowtie/align tests * Fix genomegenerate test * Fixing README linting 2021-03-23 17:55:01 +00:00			`- path: ./output/index/star/SA`
Restructure tests to run individually for each module 2021-02-03 16:02:58 +00:00			`md5sum: 3e70e4fc6d031e1915bb510727f2c559`
Add default output dir for modules that create indices, updated (#336) * Add default output dir for modules that create indices * Change path for index module test output * Fix bowtie2/align tests * Fixing bowtie/align tests * Fix genomegenerate test * Fixing README linting 2021-03-23 17:55:01 +00:00			`- path: ./output/index/star/SAindex`
Restructure tests to run individually for each module 2021-02-03 16:02:58 +00:00			`md5sum: a94198b95a245d4f64af2a7133b6ec7b`
Add default output dir for modules that create indices, updated (#336) * Add default output dir for modules that create indices * Change path for index module test output * Fix bowtie2/align tests * Fixing bowtie/align tests * Fix genomegenerate test * Fixing README linting 2021-03-23 17:55:01 +00:00			`- path: ./output/index/star/chrLength.txt`
Restructure tests to run individually for each module 2021-02-03 16:02:58 +00:00			`md5sum: f2bea3725fe1c01420c57fb73bdeb31a`
Add default output dir for modules that create indices, updated (#336) * Add default output dir for modules that create indices * Change path for index module test output * Fix bowtie2/align tests * Fixing bowtie/align tests * Fix genomegenerate test * Fixing README linting 2021-03-23 17:55:01 +00:00			`- path: ./output/index/star/chrNameLength.txt`
Restructure tests to run individually for each module 2021-02-03 16:02:58 +00:00			`md5sum: c7ceb0a8827b2ea91c386933bee48742`
Add default output dir for modules that create indices, updated (#336) * Add default output dir for modules that create indices * Change path for index module test output * Fix bowtie2/align tests * Fixing bowtie/align tests * Fix genomegenerate test * Fixing README linting 2021-03-23 17:55:01 +00:00			`- path: ./output/index/star/chrStart.txt`
Restructure tests to run individually for each module 2021-02-03 16:02:58 +00:00			`md5sum: faf5c55020c99eceeef3e34188ac0d2f`
Add default output dir for modules that create indices, updated (#336) * Add default output dir for modules that create indices * Change path for index module test output * Fix bowtie2/align tests * Fixing bowtie/align tests * Fix genomegenerate test * Fixing README linting 2021-03-23 17:55:01 +00:00			`- path: ./output/index/star/exonGeTrInfo.tab`
Restructure tests to run individually for each module 2021-02-03 16:02:58 +00:00			`md5sum: aec6e7a1ae3fc8c638ce5a9ce9c886b6`
Add default output dir for modules that create indices, updated (#336) * Add default output dir for modules that create indices * Change path for index module test output * Fix bowtie2/align tests * Fixing bowtie/align tests * Fix genomegenerate test * Fixing README linting 2021-03-23 17:55:01 +00:00			`- path: ./output/index/star/exonInfo.tab`
Restructure tests to run individually for each module 2021-02-03 16:02:58 +00:00			`md5sum: 42eca6ebc2dc72d9d6e6b3acd3714343`
Add default output dir for modules that create indices, updated (#336) * Add default output dir for modules that create indices * Change path for index module test output * Fix bowtie2/align tests * Fixing bowtie/align tests * Fix genomegenerate test * Fixing README linting 2021-03-23 17:55:01 +00:00			`- path: ./output/index/star/sjdbInfo.txt`
Restructure tests to run individually for each module 2021-02-03 16:02:58 +00:00			`md5sum: 1082ab459363b3f2f7aabcef0979c1ed`
Add default output dir for modules that create indices, updated (#336) * Add default output dir for modules that create indices * Change path for index module test output * Fix bowtie2/align tests * Fixing bowtie/align tests * Fix genomegenerate test * Fixing README linting 2021-03-23 17:55:01 +00:00			`- path: ./output/index/star/sjdbList.fromGTF.out.tab`
Restructure tests to run individually for each module 2021-02-03 16:02:58 +00:00			`md5sum: d41d8cd98f00b204e9800998ecf8427e`
Add default output dir for modules that create indices, updated (#336) * Add default output dir for modules that create indices * Change path for index module test output * Fix bowtie2/align tests * Fixing bowtie/align tests * Fix genomegenerate test * Fixing README linting 2021-03-23 17:55:01 +00:00			`- path: ./output/index/star/sjdbList.out.tab`
Restructure tests to run individually for each module 2021-02-03 16:02:58 +00:00			`md5sum: d41d8cd98f00b204e9800998ecf8427e`
Add default output dir for modules that create indices, updated (#336) * Add default output dir for modules that create indices * Change path for index module test output * Fix bowtie2/align tests * Fixing bowtie/align tests * Fix genomegenerate test * Fixing README linting 2021-03-23 17:55:01 +00:00			`- path: ./output/index/star/transcriptInfo.tab`
			`md5sum: 8fbe69abbbef4f89da3854873984dbac`
			`- path: ./output/index/star/genomeParameters.txt`