nf-core_modules/tests/modules/busco/nextflow.config

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process {
publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
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withName: 'test_busco_genome_single_fasta:BUSCO' {
ext.args = '--mode genome'
}
withName: 'test_busco_genome_multi_fasta:BUSCO' {
ext.args = '--mode genome'
}
withName: 'test_busco_eukaryote_metaeuk:BUSCO' {
ext.args = '--mode genome'
}
withName: 'test_busco_eukaryote_augustus:BUSCO' {
ext.args = '--mode genome --augustus'
}
withName: 'test_busco_protein:BUSCO' {
ext.args = '--mode proteins'
}
withName: 'test_busco_transcriptome:BUSCO'{
ext.args = '--mode transcriptome'
}
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}