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67 lines
1.8 KiB
YAML
67 lines
1.8 KiB
YAML
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name: "merquryfk_katgc"
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description: A reimplemenation of Kat GC to work with FastK databases
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keywords:
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- k-mer
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- GC content
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tools:
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- "merquryfk":
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description: "FastK based version of Merqury"
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homepage: "https://github.com/thegenemyers/MERQURY.FK"
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documentation: ""
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tool_dev_url: "https://github.com/thegenemyers/MERQURY.FK"
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doi: ""
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licence: "https://github.com/thegenemyers/MERQURY.FK/blob/main/LICENSE"
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fastk_hist:
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type: file
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description: A histogram files from the program FastK
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pattern: "*.hist"
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- fastk_ktab:
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type: file
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description: ktab files from the program FastK
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pattern: "*.ktab*"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- filled_gc_plot_png:
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type: file
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description: A filled GC content plot in PNG format
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pattern: "*.fi.png"
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- filled_gc_plot_pdf:
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type: file
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description: A filled GC content plot in PDF format
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pattern: "*.fi.pdf"
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- line_gc_plot_png:
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type: file
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description: A line GC content plot in PNG format
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pattern: "*.ln.png"
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- line_gc_plot_pdf:
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type: file
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description: A line GC content plot in PDF format
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pattern: "*.ln.pdf"
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- stacked_gc_plot_png:
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type: file
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description: A stacked GC content plot in PNG format
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pattern: "*.st.png"
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- stacked_gc_plot_pdf:
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type: file
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description: A stacked GC content plot in PDF format
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pattern: "*.st.pdf"
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authors:
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- "@mahesh-panchal"
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