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16 lines
530 B
Text
16 lines
530 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { MAPDAMAGE2 } from '../../../modules/mapdamage2/main.nf' addParams( options: [:] )
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workflow test_mapdamage2 {
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input = [ [ id:'test', single_end:false ], // meta map
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file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true)
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]
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fasta = file(params.test_data['homo_sapiens']['genome']['genome_fasta'], checkIfExists: true)
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MAPDAMAGE2 ( input, fasta )
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}
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