nf-core_modules/tests/software/bcftools/mpileup/main.nf

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2021-02-23 18:05:57 +00:00
#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { BCFTOOLS_MPILEUP } from '../../../../software/bcftools/mpileup/main.nf' addParams( options: ['args2': '--no-version --ploidy 1 --multiallelic-caller'] )
workflow test_bcftools_mpileup {
def input = []
input = [ [ id:'test' ], // meta map
[ file("${launchDir}/tests/data/bam/test-sc2-artic-v3.bam", checkIfExists: true) ]]
fasta = [ file("${launchDir}/tests/data/fasta/sarscov2/MN908947.3.fa", checkIfExists: true) ]
BCFTOOLS_MPILEUP ( input, fasta )
}