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65 lines
1.5 KiB
YAML
65 lines
1.5 KiB
YAML
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name: peddy
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description: Manipulation, validation and exploration of pedigrees
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keywords:
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- pedigrees
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- ped
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- family
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tools:
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- peddy:
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description: genotype, ped correspondence check, ancestry check, sex check. directly, quickly on VCF
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homepage: https://github.com/brentp/peddy
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documentation: https://peddy.readthedocs.io/en/latest/
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tool_dev_url: https://github.com/brentp/peddy
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doi: "https://doi.org/10.1016/j.ajhg.2017.01.017"
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licence: ['MIT']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- vcf:
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type: file
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description: VCF file
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pattern: "*.{vcf.gz}"
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- ped:
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type: file
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description: PED/FAM file
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pattern: "*.{ped,fam}"
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- vcf_tbi:
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type: file
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description: TBI file
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pattern: "*.{vcf.gz.tbi}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- ped:
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type: file
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description: PED/FAM file
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pattern: "*.peddy.{ped}"
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- html:
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type: file
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description: HTML file
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pattern: "*.{html}"
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- csv:
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type: file
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description: CSV file
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pattern: "*.{csv}"
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- png:
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type: file
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description: PNG file
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pattern: "*.{png}"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@rannick"
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