mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 11:38:17 +00:00
48 lines
1.3 KiB
YAML
48 lines
1.3 KiB
YAML
|
name: "panaroo_run"
|
||
|
|
description: A fast and scalable tool for bacterial pangenome analysis
|
||
|
|
keywords:
|
||
|
|
- gff
|
||
|
|
- pan-genome
|
||
|
|
- alignment
|
||
|
|
tools:
|
||
|
|
- "panaroo":
|
||
|
|
description: "panaroo - an updated pipeline for pangenome investigation"
|
||
|
|
homepage: "https://gtonkinhill.github.io/panaroo/#/"
|
||
|
|
documentation: "https://gtonkinhill.github.io/panaroo/#/gettingstarted/quickstart"
|
||
|
|
tool_dev_url: "https://github.com/gtonkinhill/panaroo"
|
||
|
|
doi: "10.1186/s13059-020-02090-4"
|
||
|
|
licence: "['MIT']"
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- gff:
|
||
|
|
type: file
|
||
|
|
description: A set of GFF3 formatted files
|
||
|
|
pattern: "*.{gff}"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
- results:
|
||
|
|
type: directory
|
||
|
|
description: Directory containing Panaroo result files
|
||
|
|
pattern: "*/*"
|
||
|
|
- aln:
|
||
|
|
type: file
|
||
|
|
description: Core-genome alignment produced by Panaroo (Optional)
|
||
|
|
pattern: "*.{fasta}"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@rpetit3"
|