mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-24 11:48:17 +00:00
33 lines
1,023 B
YAML
33 lines
1,023 B
YAML
|
name: hmmcopy_generatemap
|
||
|
|
description: Perl script (generateMap.pl) generates the mappability of a genome given a certain size of reads, for input to hmmcopy mapcounter. Takes a very long time on large genomes, is not parallelised at all.
|
||
|
|
keywords:
|
||
|
|
- hmmcopy
|
||
|
|
- mapcounter
|
||
|
|
- mappability
|
||
|
|
tools:
|
||
|
|
- hmmcopy:
|
||
|
|
description: C++ based programs for analyzing BAM files and preparing read counts -- used with bioconductor-hmmcopy
|
||
|
|
homepage: https://github.com/shahcompbio/hmmcopy_utils
|
||
|
|
documentation: https://github.com/shahcompbio/hmmcopy_utils
|
||
|
|
tool_dev_url: https://github.com/shahcompbio/hmmcopy_utils
|
||
|
|
doi: ""
|
||
|
|
licence: ['GPL v3']
|
||
|
|
|
||
|
|
input:
|
||
|
|
- fasta:
|
||
|
|
type: file
|
||
|
|
description: Input genome fasta file
|
||
|
|
|
||
|
|
output:
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
- bigwig:
|
||
|
|
type: file
|
||
|
|
description: bigwig file containing the mappability of the genome
|
||
|
|
pattern: "*.{map.bw}"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@sppearce"
|