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44 lines
1.2 KiB
YAML
44 lines
1.2 KiB
YAML
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name: adapterremovalfixprefix
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description: Fixes prefixes from AdapterRemoval2 output to make sure no clashing read names are in the output. For use with DeDup.
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keywords:
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- adapterremoval
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- fastq
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- dedup
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tools:
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- adapterremovalfixprefix:
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description: Fixes adapter removal prefixes to make sure no clashing read names are in the output.
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homepage: https://github.com/apeltzer/AdapterRemovalFixPrefix
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documentation: None
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tool_dev_url: https://github.com/apeltzer/AdapterRemovalFixPrefix
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doi: "10.1186/s13059-016-0918-z"
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licence: ["GPL v3"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fastq:
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type: file
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description: FASTQ file from AdapterRemoval2
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pattern: "*.{fq.gz,fastq.gz}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- fixed_fastq:
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type: file
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description: FASTQ file with fixed read prefixes for DeDup
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pattern: "*.{fq.gz}"
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authors:
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- "@jfy133"
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