nf-core_modules/modules/yara/mapper/meta.yml

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name: yara_mapper
description: Align reads to a reference genome using YARA
keywords:
- align
- genome
- reference
tools:
- yara:
description: Yara is an exact tool for aligning DNA sequencing reads to reference genomes.
homepage: https://github.com/seqan/seqan
documentation: https://github.com/seqan/seqan
tool_dev_url: https://github.com/seqan/seqan
doi: ""
licence:
[
"https://raw.githubusercontent.com/seqan/seqan/develop/apps/yara/LICENSE",
]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- reads:
type: file
description: |
List of input FastQ files of size 1 and 2 for single-end and paired-end data,
respectively.
- index:
type: file
description: YARA genome index files
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- bam:
type: file
description: Sorted BAM file
pattern: "*.{bam}"
- bai:
type: file
description: Sorted BAM file index
pattern: "*.{bai}"
authors:
- "@apeltzer"