nf-core_modules/tests/modules/tiddit/sv/test.yml

- name: tiddit sv test_tiddit_sv_bam
  command: nextflow run ./tests/modules/tiddit/sv -entry test_tiddit_sv_bam -c ./tests/config/nextflow.config -c ./tests/modules/tiddit/sv/nextflow.config
  tags:
    - tiddit
    - tiddit/sv
  files:
    - path: output/tiddit/test.ploidies.tab
      md5sum: 6319d3611f7b6b94425a184d274b3dfc
    - path: output/tiddit/test.vcf
      md5sum: 157907671297c34bacfd3e73eff9bbdf

- name: tiddit sv test_tiddit_sv_cram
  command: nextflow run ./tests/modules/tiddit/sv -entry test_tiddit_sv_cram -c ./tests/config/nextflow.config -c ./tests/modules/tiddit/sv/nextflow.config
  tags:
    - tiddit
    - tiddit/sv
  files:
    - path: output/tiddit/test.ploidies.tab
      md5sum: f1162a940ddc8b963f6e0e506bb5c136
    - path: output/tiddit/test.vcf
      md5sum: 56687eeffa452f78f18d54a69dd17c78

- name: tiddit sv test_tiddit_sv_nobwa_bam
  command: nextflow run ./tests/modules/tiddit/sv -entry test_tiddit_sv_nobwa_bam -c ./tests/config/nextflow.config -c ./tests/modules/tiddit/sv/nextflow.config
  tags:
    - tiddit
    - tiddit/sv
  files:
    - path: output/tiddit/test.ploidies.tab
      md5sum: 6319d3611f7b6b94425a184d274b3dfc
    - path: output/tiddit/test.vcf
      md5sum: ddac94f9cd4f991b6ce2052d7f78a525

- name: tiddit sv test_tiddit_sv_nobwa_cram
  command: nextflow run ./tests/modules/tiddit/sv -entry test_tiddit_sv_nobwa_cram -c ./tests/config/nextflow.config -c ./tests/modules/tiddit/sv/nextflow.config
  tags:
    - tiddit
    - tiddit/sv
  files:
    - path: output/tiddit/test.ploidies.tab
      md5sum: f1162a940ddc8b963f6e0e506bb5c136
    - path: output/tiddit/test.vcf
      md5sum: 680e60574cc28d38c9673a916ecd675c
restructure tiddit/sv + test (just one for now) 2022-06-03 11:00:29 +00:00			`- name: tiddit sv test_tiddit_sv_bam`
			`command: nextflow run ./tests/modules/tiddit/sv -entry test_tiddit_sv_bam -c ./tests/config/nextflow.config -c ./tests/modules/tiddit/sv/nextflow.config`
feat: add tiddit_sv module 2021-02-24 14:59:10 +00:00			`tags:`
			`- tiddit`
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-04-08 08:10:52 +00:00			`- tiddit/sv`
feat: add tiddit_sv module 2021-02-24 14:59:10 +00:00			`files:`
restructure tiddit/sv + test (just one for now) 2022-06-03 11:00:29 +00:00			`- path: output/tiddit/test.ploidies.tab`
			`md5sum: 6319d3611f7b6b94425a184d274b3dfc`
feat: add tiddit_sv module 2021-02-24 14:59:10 +00:00			`- path: output/tiddit/test.vcf`
Update tiddit to 3.1.0 (#1767) * update TIDDIT to 3.1.0 * update VCF too as version is in file 2022-06-13 14:24:34 +00:00			`md5sum: 157907671297c34bacfd3e73eff9bbdf`
add test + fix issues 2022-06-03 13:51:02 +00:00
			`- name: tiddit sv test_tiddit_sv_cram`
			`command: nextflow run ./tests/modules/tiddit/sv -entry test_tiddit_sv_cram -c ./tests/config/nextflow.config -c ./tests/modules/tiddit/sv/nextflow.config`
			`tags:`
			`- tiddit`
			`- tiddit/sv`
			`files:`
			`- path: output/tiddit/test.ploidies.tab`
			`md5sum: f1162a940ddc8b963f6e0e506bb5c136`
			`- path: output/tiddit/test.vcf`
Update tiddit to 3.1.0 (#1767) * update TIDDIT to 3.1.0 * update VCF too as version is in file 2022-06-13 14:24:34 +00:00			`md5sum: 56687eeffa452f78f18d54a69dd17c78`
TIDDIT - add --skip_assembly when no bwa specified (#1769) add --skip_assembly when no bwa specified 2022-06-13 15:02:59 +00:00
			`- name: tiddit sv test_tiddit_sv_nobwa_bam`
			`command: nextflow run ./tests/modules/tiddit/sv -entry test_tiddit_sv_nobwa_bam -c ./tests/config/nextflow.config -c ./tests/modules/tiddit/sv/nextflow.config`
			`tags:`
			`- tiddit`
			`- tiddit/sv`
			`files:`
			`- path: output/tiddit/test.ploidies.tab`
			`md5sum: 6319d3611f7b6b94425a184d274b3dfc`
			`- path: output/tiddit/test.vcf`
			`md5sum: ddac94f9cd4f991b6ce2052d7f78a525`

			`- name: tiddit sv test_tiddit_sv_nobwa_cram`
			`command: nextflow run ./tests/modules/tiddit/sv -entry test_tiddit_sv_nobwa_cram -c ./tests/config/nextflow.config -c ./tests/modules/tiddit/sv/nextflow.config`
			`tags:`
			`- tiddit`
			`- tiddit/sv`
			`files:`
			`- path: output/tiddit/test.ploidies.tab`
			`md5sum: f1162a940ddc8b963f6e0e506bb5c136`
			`- path: output/tiddit/test.vcf`
			`md5sum: 680e60574cc28d38c9673a916ecd675c`