nf-core_modules/tools/samtools/faidx/meta.yml

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2020-01-23 10:36:21 +00:00
name: samtools faidx
description: index a fasta file
keywords:
- faidx
tools:
- samtools:
description: |
SAMtools is a set of utilities for interacting with and post-processing
short DNA sequence read alignments in the SAM, BAM and CRAM formats, written by Heng Li.
These files are generated as output by short read aligners like BWA.
homepage: http://www.htslib.org/
documentation: hhttp://www.htslib.org/doc/samtools.html
doi: 10.1093/bioinformatics/btp352
input:
-
- input:
type: file
description: Input fasta file
pattern: *.{fasta,fa}
output:
-
- faidx:
type: file
description: samtools index fasta file
pattern: *.fasta.fai
authors:
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- @maxulysse