2020-01-23 10:36:21 +00:00
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name: samtools faidx
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description: index a fasta file
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keywords:
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- faidx
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tools:
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- samtools:
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description: |
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SAMtools is a set of utilities for interacting with and post-processing
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short DNA sequence read alignments in the SAM, BAM and CRAM formats, written by Heng Li.
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These files are generated as output by short read aligners like BWA.
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homepage: http://www.htslib.org/
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documentation: hhttp://www.htslib.org/doc/samtools.html
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doi: 10.1093/bioinformatics/btp352
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input:
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-
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- input:
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type: file
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description: Input fasta file
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pattern: *.{fasta,fa}
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output:
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-
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- faidx:
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type: file
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description: samtools index fasta file
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pattern: *.fasta.fai
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authors:
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2020-07-11 11:42:13 +00:00
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- @maxulysse
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