2020-03-06 14:31:44 +00:00
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name: cutadapt
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on:
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push: {}
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pull_request:
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paths: tools/cutadapt/*
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jobs:
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run_ci_test:
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runs-on: ubuntu-latest
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steps:
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# Check out the repository
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2020-03-06 14:41:37 +00:00
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- uses: actions/checkout@v2
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- name: Checkout submodules
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shell: bash
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run: |
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auth_header="$(git config --local --get http.https://github.com/.extraheader)"
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git submodule sync --recursive
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git -c "http.extraheader=$auth_header" -c protocol.version=2 submodule update --init --force --recursive --depth=1
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2020-03-06 14:31:44 +00:00
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- name: Install Nextflow
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run: |
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wget -qO- get.nextflow.io | bash
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sudo mv nextflow /usr/local/bin/
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# Test the module
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2020-03-06 14:50:29 +00:00
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- run: |
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cd tools/cutadapt/sort/test_paired/
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nextflow run . -ansi-log false
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