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33 lines
1 KiB
Text
33 lines
1 KiB
Text
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// Import generic module functions
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include { initOptions; saveFiles; getSoftwareName } from './functions'
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params.options = [:]
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def options = initOptions(params.options)
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process FASTQC {
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tag "$meta.id"
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label 'process_medium'
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publishDir "${params.outdir}",
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mode: params.publish_dir_mode,
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saveAs: { filename -> saveFiles(filename: filename, options: params.options, publish_dir: getSoftwareName(task.process), publish_id: meta.id) }
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conda(params.enable_conda ? "bioconda::multiqc=1.9" : null)
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container "quay.io/biocontainers/multiqc:1.9--py_1"
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input:
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tuple val(meta), path("*.html")
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output:
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tuple val(meta), path("multiqc_data"), emit: dir
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tuple val(meta), path("*.html"), emit: html
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path "*.version.txt", emit: version
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script:
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def software = getSoftwareName(task.process)
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def prefix = options.suffix ? "${meta.id}.${options.suffix}" : "${meta.id}"
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"""
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multiqc --version | sed -e "s/version//g" > ${software}.version.txt
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"""
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}
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}
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