mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-15 06:03:10 +00:00
42 lines
1.1 KiB
YAML
42 lines
1.1 KiB
YAML
|
name: gatk4_gatherpileupsummaries
|
||
|
|
description: write your description here
|
||
|
|
keywords:
|
||
|
|
- sort
|
||
|
|
tools:
|
||
|
|
- gatk4:
|
||
|
|
description: Genome Analysis Toolkit (GATK4)
|
||
|
|
homepage: https://gatk.broadinstitute.org/hc/en-us
|
||
|
|
documentation: https://gatk.broadinstitute.org/hc/en-us
|
||
|
|
tool_dev_url: https://github.com/broadinstitute/gatk
|
||
|
|
doi: "10.1158/1538-7445.AM2017-3590"
|
||
|
|
licence: ['BSD-3-clause']
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- pileup:
|
||
|
|
type: (list of) file(s)
|
||
|
|
description: Pileup files from gatk4/getpileupsummaries
|
||
|
|
pattern: "*.pileups.table"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
- table:
|
||
|
|
type: file
|
||
|
|
description: Pileup file
|
||
|
|
pattern: "*.pileups.table"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@FriederikeHanssen"
|