nf-core_modules/modules/gatk4/selectvariants/meta.yml

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name: gatk4_selectvariants
description: Select a subset of variants from a VCF file
keywords:
- gatk
- gatk4
- selectvariants
- vcf
tools:
- gatk4:
description: |
Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools
with a primary focus on variant discovery and genotyping. Its powerful processing engine
and high-performance computing features make it capable of taking on projects of any size.
homepage: https://gatk.broadinstitute.org/hc/en-us
documentation: https://gatk.broadinstitute.org/hc/en-us/articles/360036362532-SelectVariants
tool_dev_url: https://github.com/broadinstitute/gatk
doi: 10.1158/1538-7445.AM2017-3590
licence: ["Apache-2.0"]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test']
- vcf:
type: list
description: VCF(.gz) file
pattern: "*.{vcf,vcf.gz}"
- vcf_idx:
type: list
description: VCF file index
pattern: "*.{idx,tbi}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- vcf:
type: file
description: Compressed VCF file
pattern: "*.selectvariants.vcf.gz"
- vcf_tbi:
type: list
description: VCF file index
pattern: "*.{idx,tbi}"
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
authors:
- "@mjcipriano"