nf-core_modules/deprecated/samtools/faidx/main.nf

process samtools_faidx {
    tag "$fasta"

    container 'quay.io/biocontainers/samtools:1.9--h10a08f8_12'

    input:
        path fasta

    output:
        path "${fasta}.fai"

    script:
    """
    samtools faidx ${fasta}
    """
}
add samtools faidx to index fasta file 2020-01-23 10:36:21 +00:00			`process samtools_faidx {`
Minor style improvents This commit provides a minor refactoring with som Nextflow code style improvments: - Replaces `.toGiga()` with `.giga` - Replaces `tag { foo }` with `tag "$foo"` - Move publishDir before input declarations. Directives should be before the first input. Tho this is not enforced, it may be in future versions. - Replaces input `file` with `path` - Remove unnecessary parentheses 2020-07-27 10:11:42 +00:00			`tag "$fasta"`
add samtools faidx to index fasta file 2020-01-23 10:36:21 +00:00
			`container 'quay.io/biocontainers/samtools:1.9--h10a08f8_12'`

			`input:`
Minor style improvents This commit provides a minor refactoring with som Nextflow code style improvments: - Replaces `.toGiga()` with `.giga` - Replaces `tag { foo }` with `tag "$foo"` - Move publishDir before input declarations. Directives should be before the first input. Tho this is not enforced, it may be in future versions. - Replaces input `file` with `path` - Remove unnecessary parentheses 2020-07-27 10:11:42 +00:00			`path fasta`
add samtools faidx to index fasta file 2020-01-23 10:36:21 +00:00
			`output:`
Minor style improvents This commit provides a minor refactoring with som Nextflow code style improvments: - Replaces `.toGiga()` with `.giga` - Replaces `tag { foo }` with `tag "$foo"` - Move publishDir before input declarations. Directives should be before the first input. Tho this is not enforced, it may be in future versions. - Replaces input `file` with `path` - Remove unnecessary parentheses 2020-07-27 10:11:42 +00:00			`path "${fasta}.fai"`
add samtools faidx to index fasta file 2020-01-23 10:36:21 +00:00
			`script:`
			`"""`
			`samtools faidx ${fasta}`
			`"""`
			`}`