nf-core_modules/modules/msisensor/scan/meta.yml

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name: msisensor_scan
description: Scan a reference genome to get microsatellite & homopolymer information
keywords:
- homoploymer,microsatellite
tools:
- msisensor:
description: MSIsensor is a C++ program to detect replication slippage variants at microsatellite regions, and differentiate them as somatic or germline.
homepage: https://github.com/ding-lab/msisensor
documentation: None
tool_dev_url: None
doi: "10.1093/bioinformatics/btt755"
licence: ["MIT"]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- fasta:
type: file
description: FASTA file
pattern: "*.{fa,fasta}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- txt:
type: file
description: MSIsensor scan output file of homopolymers & minisatellites
pattern: "*.msisensor_scan.txt"
authors:
- "@kevbrick"