nf-core_modules/tests/modules/filtlong/test.yml

- name: filtlong test_filtlong
  command: nextflow run ./tests/modules/filtlong -entry test_filtlong -c ./tests/config/nextflow.config  -c ./tests/modules/filtlong/nextflow.config
  tags:
    - filtlong
  files:
    - path: output/filtlong/test_lr.fastq.gz
    - path: output/filtlong/test_lr.log
      contains: ["Scoring long reads"]

- name: filtlong test_filtlong_illumina_se
  command: nextflow run ./tests/modules/filtlong -entry test_filtlong_illumina_se -c ./tests/config/nextflow.config  -c ./tests/modules/filtlong/nextflow.config
  tags:
    - filtlong
  files:
    - path: output/filtlong/test_lr.fastq.gz
    - path: output/filtlong/test_lr.log
      contains: ["Scoring long reads"]

- name: filtlong test_filtlong_illumina_pe
  command: nextflow run ./tests/modules/filtlong -entry test_filtlong_illumina_pe -c ./tests/config/nextflow.config  -c ./tests/modules/filtlong/nextflow.config
  tags:
    - filtlong
  files:
    - path: output/filtlong/test_lr.fastq.gz
    - path: output/filtlong/test_lr.log
      contains: ["Scoring long reads"]
add filtlong (#919) 2021-10-27 17:00:11 +02:00			`- name: filtlong test_filtlong`
Fixes running without shortreads, and also ensures all tests produce non-empty fastq.gz files 2022-05-31 13:38:18 +02:00			`command: nextflow run ./tests/modules/filtlong -entry test_filtlong -c ./tests/config/nextflow.config -c ./tests/modules/filtlong/nextflow.config`
add filtlong (#919) 2021-10-27 17:00:11 +02:00			`tags:`
			`- filtlong`
			`files:`
Don't hardcode forced output names 2022-05-31 15:46:28 +02:00			`- path: output/filtlong/test_lr.fastq.gz`
Update filtlong module to output log file (#1873) Redirect logging information to log file in filtlong module 2022-07-12 17:05:31 +02:00			`- path: output/filtlong/test_lr.log`
			`contains: ["Scoring long reads"]`
add filtlong (#919) 2021-10-27 17:00:11 +02:00
			`- name: filtlong test_filtlong_illumina_se`
Fixes running without shortreads, and also ensures all tests produce non-empty fastq.gz files 2022-05-31 13:38:18 +02:00			`command: nextflow run ./tests/modules/filtlong -entry test_filtlong_illumina_se -c ./tests/config/nextflow.config -c ./tests/modules/filtlong/nextflow.config`
add filtlong (#919) 2021-10-27 17:00:11 +02:00			`tags:`
			`- filtlong`
			`files:`
Don't hardcode forced output names 2022-05-31 15:46:28 +02:00			`- path: output/filtlong/test_lr.fastq.gz`
Update filtlong module to output log file (#1873) Redirect logging information to log file in filtlong module 2022-07-12 17:05:31 +02:00			`- path: output/filtlong/test_lr.log`
			`contains: ["Scoring long reads"]`
add filtlong (#919) 2021-10-27 17:00:11 +02:00
			`- name: filtlong test_filtlong_illumina_pe`
Fixes running without shortreads, and also ensures all tests produce non-empty fastq.gz files 2022-05-31 13:38:18 +02:00			`command: nextflow run ./tests/modules/filtlong -entry test_filtlong_illumina_pe -c ./tests/config/nextflow.config -c ./tests/modules/filtlong/nextflow.config`
add filtlong (#919) 2021-10-27 17:00:11 +02:00			`tags:`
			`- filtlong`
			`files:`
Don't hardcode forced output names 2022-05-31 15:46:28 +02:00			`- path: output/filtlong/test_lr.fastq.gz`
Update filtlong module to output log file (#1873) Redirect logging information to log file in filtlong module 2022-07-12 17:05:31 +02:00			`- path: output/filtlong/test_lr.log`
			`contains: ["Scoring long reads"]`