nf-core_modules/software/delly/call/meta.yml

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name: delly_call
description: Call structural variants
keywords:
- genome
- structural
- variants
- bcf
tools:
- delly:
description: Structural variant discovery by integrated paired-end and split-read analysis
homepage: https://github.com/dellytools/delly
documentation: https://github.com/dellytools/delly/blob/master/README.md
tool_dev_url: None
doi: "DOI:10.1093/bioinformatics/bts378"
licence: ["BSD-3-clause"]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- bam:
type: file
description: BAM file from alignment must be sorted, indexed, and duplicate marked
pattern: "*.{bam}"
- fasta:
type: file
description: The reference fasta file
- fai:
type: file
description: Index of reference fasta file to identify split-reads
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
- bcf:
type: file
description: BCF format
pattern: "*.{bcf}"
- csi:
type: file
description: A generated csi index that matches the bcf output
pattern: "*.{bcf.csi}"
authors:
- "@projectoriented"