nf-core_modules/tests/software/pairtools/parse/main.nf

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#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { PAIRTOOLS_PARSE } from '../../../../software/pairtools/parse/main.nf' addParams( options: ['suffix':'.raw'] )
workflow test_pairtools_parse {
input = [ [ id:'test', single_end:false ], // meta map
file("https://raw.githubusercontent.com/open2c/pairtools/master/tests/data/mock.sam", checkIfExists: true) ]
sizes = file("https://raw.githubusercontent.com/open2c/pairtools/master/tests/data/mock.chrom.sizes", checkIfExists:true)
PAIRTOOLS_PARSE ( input, sizes )
}