nf-core_modules/tests/software/strelka/germline/test.yml

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- name: strelka germline
command: nextflow run ./tests/software/strelka/germline -entry test_strelka_germline -c tests/config/nextflow.config
tags:
- strelka
- strelka/germline
files:
- path: output/strelka/test.variants.vcf.gz
- path: output/strelka/test.variants.vcf.gz.tbi
- path: output/strelka/test.genome.vcf.gz
- path: output/strelka/test.genome.vcf.gz.tbi
- name: strelka germline target bed
command: nextflow run ./tests/software/strelka/germline -entry test_strelka_germline_target_bed -c tests/config/nextflow.config
tags:
- strelka
- strelka/germline
files:
- path: output/strelka/test.variants.vcf.gz
- path: output/strelka/test.variants.vcf.gz.tbi
- path: output/strelka/test.genome.vcf.gz
- path: output/strelka/test.genome.vcf.gz.tbi