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19 lines
878 B
Markdown
19 lines
878 B
Markdown
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# Updating the docker container and making a new module release
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Cell Ranger is a commercial tool by 10X Genomics. The container provided for the cellranger nf-core module is not provided nor supported by 10x Genomics. Updating the Cell Ranger version in the container and pushing the update to Dockerhub needs to be done manually.
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1. Navigate to the [Cell Ranger download page](https://support.10xgenomics.com/single-cell-gene-expression/software/downloads/latest) and download the tar ball of the desired Cell Ranger version with `curl` or `wget`. Place this file in the same folder where the Dockerfile lies.
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2. Edit the Dockerfile: update the Cell Ranger version in this line:
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```bash
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ENV CELLRANGER_VER <VERSION>
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```
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3. Create the container:
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```bash
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docker build . -t nfcore/cellranger:<VERSION>
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docker push nfcore/cellranger:<VERSION>
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```
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