mirror of
https://github.com/MillironX/nf-core_modules.git
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36 lines
1 KiB
YAML
36 lines
1 KiB
YAML
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- name: checkm lineagewf
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command: nextflow run ./tests/modules/checkm/lineagewf -entry test_checkm_lineagewf -c tests/config/nextflow.config
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tags:
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- checkm
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- checkm/lineagewf
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files:
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- path: output/checkm/test.tsv
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md5sum: d5559764f563c4b55223e4e4a3dc1ec9
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- path: output/checkm/test/checkm.log
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contains:
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- "INFO: Parsing HMM hits to marker genes:"
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- path: output/checkm/test/lineage.ms
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contains:
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- "# [Lineage Marker File]"
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- "contigs"
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- "UID1"
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- name: checkm lineagewf_multi
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command: nextflow run ./tests/modules/checkm/lineagewf -entry test_checkm_lineagewf_multi -c tests/config/nextflow.config
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tags:
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- checkm
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- checkm/lineagewf
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files:
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- path: output/checkm/test.tsv
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md5sum: 7e0fa177dcf151b84b7751813fbde3d1
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- path: output/checkm/test/checkm.log
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contains:
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- "INFO: Parsing HMM hits to marker genes:"
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- path: output/checkm/test/lineage.ms
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contains:
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- "# [Lineage Marker File]"
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- "contigs"
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- "UID1"
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- "genome"
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