mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-25 20:08:17 +00:00
18 lines
757 B
Text
18 lines
757 B
Text
|
#!/usr/bin/env nextflow
|
||
|
|
|
||
|
|
nextflow.enable.dsl = 2
|
||
|
|
|
||
|
|
include { HOMER_MAKETAGDIRECTORY } from '../../../../modules/homer/maketagdirectory/main.nf' addParams( options: [args: '-format bed'] )
|
||
|
|
include { HOMER_FINDPEAKS } from '../../../../modules/homer/findpeaks/main.nf' addParams( options: [args: '-style factor'] )
|
||
|
|
|
||
|
|
workflow test_homer_findpeaks {
|
||
|
|
input = [[id:'test'],
|
||
|
|
[file(params.test_data['sarscov2']['genome']['test_bed'], checkIfExists: true),
|
||
|
|
file(params.test_data['sarscov2']['genome']['test2_bed'], checkIfExists: true)]]
|
||
|
|
fasta = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
|
||
|
|
|
||
|
|
HOMER_MAKETAGDIRECTORY (input, fasta)
|
||
|
|
HOMER_FINDPEAKS ( HOMER_MAKETAGDIRECTORY.out.tagdir )
|
||
|
|
}
|
||
|
|
|