mirror of
https://github.com/MillironX/nf-core_modules.git
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25 lines
578 B
Bash
25 lines
578 B
Bash
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#!/usr/bin/env bash
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set -euo pipefail
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# Build and push all containers
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build_push() {
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GENOME=$1
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SNPEFF_CACHE_VERSION=$2
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SNPEFF_TAG=$3
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docker build \
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-t nfcore/snpeff:${SNPEFF_TAG}.${GENOME} \
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software/snpeff/. \
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--build-arg GENOME=${GENOME} \
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--build-arg SNPEFF_CACHE_VERSION=${SNPEFF_CACHE_VERSION}
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docker push nfcore/snpeff:${SNPEFF_TAG}.${GENOME}
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}
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build_push "GRCh37" "75" "5.0"
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build_push "GRCh38" "99" "5.0"
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build_push "GRCm38" "99" "5.0"
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build_push "CanFam3.1" "99" "5.0"
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build_push "WBcel235" "99" "5.0"
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