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27 lines
954 B
Text
27 lines
954 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { UNTAR } from '../../../../modules/untar/main.nf'
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include { CELLRANGER_MKFASTQ } from '../../../../modules/cellranger/mkfastq/main.nf'
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workflow test_cellranger_mkfastq_simple {
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simple_csv = file("https://cf.10xgenomics.com/supp/cell-exp/cellranger-tiny-bcl-simple-1.2.0.csv", checkIfExists: true)
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tiny_bcl = file("https://cf.10xgenomics.com/supp/cell-exp/cellranger-tiny-bcl-1.2.0.tar.gz", checkIfExists: true)
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UNTAR ( tiny_bcl )
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CELLRANGER_MKFASTQ ( UNTAR.out.untar, simple_csv)
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}
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workflow test_cellranger_mkfastq_illumina {
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samplesheet_csv = file("https://cf.10xgenomics.com/supp/cell-exp/cellranger-tiny-bcl-samplesheet-1.2.0.csv", checkIfExists: true)
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tiny_bcl = file("https://cf.10xgenomics.com/supp/cell-exp/cellranger-tiny-bcl-1.2.0.tar.gz", checkIfExists: true)
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UNTAR ( tiny_bcl )
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CELLRANGER_MKFASTQ ( UNTAR.out.untar, samplesheet_csv)
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}
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