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59 lines
1.5 KiB
YAML
59 lines
1.5 KiB
YAML
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name: "ultra_align"
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description: uLTRA aligner - A wrapper around minimap2 to improve small exon detection - Map reads on genome
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keywords:
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- uLTRA
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- align
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- minimap2
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- long_read
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- isoseq
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- ont
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tools:
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- "ultra":
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description: "Splice aligner of long transcriptomic reads to genome."
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homepage: "https://github.com/ksahlin/uLTRA"
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documentation: "https://github.com/ksahlin/uLTRA"
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tool_dev_url: "https://github.com/ksahlin/uLTRA"
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doi: "10.1093/bioinformatics/btab540"
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licence: "['GNU GPLV3']"
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- reads:
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type: file
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description: A fasta or fastq file of reads to align
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pattern: "*.{fa,fasta,fastq}"
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- genome:
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type: file
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description: A fasta file of reference genome
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pattern: "*.{fa,fasta}"
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- pickle:
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type: file
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description: Pickle files generated by uLTRA index
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pattern: "*.pickle"
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- db:
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type: file
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description: Database generated by uLTRA index
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pattern: "*.db"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- bam:
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type: file
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description: The aligned reads in bam format
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pattern: "*.bam"
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authors:
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- "@sguizard"
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