nf-core_modules/software/bwamem2/index/meta.yml

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name: bwamem2_index
2021-02-12 12:00:02 +00:00
description: Create BWA-mem2 index for reference genome
keywords:
- index
- fasta
- genome
- reference
tools:
- bwa:
description: |
BWA-mem2 is a software package for mapping DNA sequences against
a large reference genome, such as the human genome.
homepage: https://github.com/bwa-mem2/bwa-mem2
documentation: https://github.com/bwa-mem2/bwa-mem2#usage
params:
- outdir:
type: string
description: |
The pipeline's output directory. By default, the module will
output files into `$params.outdir/<SOFTWARE>`
- publish_dir_mode:
type: string
description: |
Value for the Nextflow `publishDir` mode parameter.
Available: symlink, rellink, link, copy, copyNoFollow, move.
- enable_conda:
type: boolean
description: |
Run the module with Conda using the software specified
via the `conda` directive
- singularity_pull_docker_container:
type: boolean
description: |
Instead of directly downloading Singularity images for use with Singularity,
force the workflow to pull and convert Docker containers instead.
input:
- fasta:
type: file
description: Input genome fasta file
output:
- index:
type: file
description: BWA genome index files
pattern: "*.{0132,amb,ann,bwt.2bit.64,pac}"
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
authors:
- "@maxulysse"