mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 03:28:17 +00:00
50 lines
1.3 KiB
YAML
50 lines
1.3 KiB
YAML
|
name: "whamg"
|
||
|
|
description: The wham suite consists of two programs, wham and whamg. wham, the original tool, is a very sensitive method with a high false discovery rate. The second program, whamg, is more accurate and better suited for general structural variant (SV) discovery.
|
||
|
|
keywords:
|
||
|
|
- whamg
|
||
|
|
- wham
|
||
|
|
- vcf
|
||
|
|
- bam
|
||
|
|
- variant calling
|
||
|
|
tools:
|
||
|
|
- "whamg":
|
||
|
|
description: "Structural variant detection and association testing"
|
||
|
|
homepage: "https://github.com/zeeev/wham"
|
||
|
|
documentation: "https://github.com/zeeev/wham"
|
||
|
|
tool_dev_url: "https://github.com/zeeev/wham"
|
||
|
|
doi: "https://doi.org/10.1371/journal.pcbi.1004572"
|
||
|
|
licence: "['MIT']"
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- bam:
|
||
|
|
type: file
|
||
|
|
description: BAM/SAM file
|
||
|
|
pattern: "*.{bam,sam}"
|
||
|
|
- bai:
|
||
|
|
type: file
|
||
|
|
description: BAM index file
|
||
|
|
pattern: "*.bai"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
- vcf:
|
||
|
|
type: file
|
||
|
|
description: Compressed VCF file
|
||
|
|
pattern: "*.vcf.gz"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@nvnieuwk"
|