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16 lines
503 B
Text
16 lines
503 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { FLASH } from '../../../software/flash/main.nf' addParams( options: [args:'-m 20 -M 100'] )
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workflow test_flash {
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def input = []
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input = [ [ id:'test', single_end:false ], // meta map
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[ file("${launchDir}/tests/data/genomics/sarscov2/fastq/test_1.fastq.gz", checkIfExists: true),
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file("${launchDir}/tests/data/genomics/sarscov2/fastq/test_2.fastq.gz", checkIfExists: true) ] ]
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FLASH ( input )
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}
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