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40 lines
1.4 KiB
YAML
40 lines
1.4 KiB
YAML
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name: "vsearch_sintax"
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description: Taxonomic classification using the sintax algorithm.
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keywords:
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- vsearch
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- sintax
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tools:
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- "vsearch":
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description: "VSEARCH is a versatile open-source tool for microbiome analysis, including chimera detection, clustering, dereplication and rereplication, extraction, FASTA/FASTQ/SFF file processing, masking, orienting, pair-wise alignment, restriction site cutting, searching, shuffling, sorting, subsampling, and taxonomic classification of amplicon sequences for metagenomics, genomics, and population genetics. (USEARCH alternative)"
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homepage: "https://github.com/torognes/vsearch"
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documentation: "None"
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tool_dev_url: "https://github.com/torognes/vsearch"
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doi: "doi: 10.7717/peerj.2584"
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licence: "['GPL v3-or-later OR BSD-2-clause']"
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input:
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- meta:
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type: map
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description: Groovy Map containing query file information e.g. [ id:'test' ]
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- queryfasta:
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type: file
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description: Query sequences in FASTA or FASTQ format
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pattern: "*.{fasta,fa,fna,faa,fastq,fq}"
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- db:
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type: file
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description: Reference database file in FASTA or UDB format
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pattern: "*"
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output:
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- tsv:
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type: file
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description: Results written to tab-delimited file
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pattern: "*.{tsv}"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@jtangrot"
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