2022-05-06 15:04:04 +00:00
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name: "meryl_count"
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2022-05-09 07:58:58 +00:00
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description: A genomic k-mer counter (and sequence utility) with nice features.
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2022-05-06 15:04:04 +00:00
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keywords:
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2022-05-09 07:58:58 +00:00
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- k-mer
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- count
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2022-05-06 15:04:04 +00:00
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tools:
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- "meryl":
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2022-05-09 07:58:58 +00:00
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description: "A genomic k-mer counter (and sequence utility) with nice features. "
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homepage: "https://github.com/marbl/meryl"
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documentation: "https://meryl.readthedocs.io/en/latest/quick-start.html"
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tool_dev_url: "https://github.com/marbl/meryl"
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2022-05-06 15:04:04 +00:00
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doi: ""
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licence: "['GPL']"
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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2022-05-09 07:58:58 +00:00
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- reads:
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type: file
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2022-05-09 07:58:58 +00:00
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description: |
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List of input FastQ files of size 1 and 2 for single-end and paired-end data,
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respectively.
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2022-05-06 15:04:04 +00:00
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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2022-05-09 07:58:58 +00:00
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- meryl_db:
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type: directory
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description: A Meryl k-mer database
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2022-05-06 15:04:04 +00:00
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authors:
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- "@mahesh-panchal"
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