nf-core_modules/tests/software/mosdepth/main.nf

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#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { MOSDEPTH } from '../../../software/mosdepth/main.nf' addParams( options: [:] )
workflow test_mosdepth {
input = [ [ id:'test', single_end:true ],
[ file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true) ],
[ file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam_bai'], checkIfExists: true) ]
]
dummy = file("dummy_file.txt")
window = 100
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MOSDEPTH ( input, dummy, window )
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}