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16 lines
542 B
Text
16 lines
542 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { RSEQC_JUNCTIONANNOTATION } from '../../../../software/rseqc/junctionannotation/main.nf' addParams(options: [:])
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workflow test_rseqc_junctionannotation {
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input = [ [ id:'test', single_end: false ], // meta map
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file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true)
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]
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bed = file(params.test_data['sarscov2']['genome']['test_bed12'], checkIfExists: true)
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RSEQC_JUNCTIONANNOTATION ( input, bed )
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}
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