nf-core_modules/modules/seqkit/replace/meta.yml

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name: seqkit_replace
description: Use seqkit to find/replace strings within sequences and sequence headers
keywords:
- seqkit
- replace
tools:
- seqkit:
description: Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen.
homepage: https://bioinf.shenwei.me/seqkit/usage/
documentation: https://bioinf.shenwei.me/seqkit/usage/
tool_dev_url: https://github.com/shenwei356/seqkit/
doi: "10.1371/journal.pone.016396"
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- fastx:
type: file
description: fasta/q file
pattern: "*.{fasta,fastq,fa,fq,fas,fna,faa}*"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- fastx:
type: file
description: fasta/q file with replaced values
pattern: "*.{fasta,fastq,fa,fq,fas,fna,faa}*"
authors:
- "@mjcipriano"