nf-core_modules/tests/modules/picard/liftovervcf/test.yml

- name: picard liftovervcf test_picard_liftovervcf
  command: nextflow run tests/modules/picard/liftovervcf -entry test_picard_liftovervcf -c tests/config/nextflow.config
  tags:
    - picard/liftovervcf
    - picard
  files:
    - path: output/picard/test.lifted.vcf.gz
      contains:
        - "chr22"
    - path: output/picard/test.unlifted.vcf.gz
    - path: output/picard/versions.yml
Picard liftover vcf (#1431) * Building Picard liftovervcf module * Building Picard liftovervcf module_test * Building Picard liftovervcf pytest * Module for picard liftover vcf created * Fixed files after linting test * Fixed trailing whitespace * Checked files with prettier * further formatting with prettier * Fixed test.yml * Fixed input variable names * Changed contain test.liftef.vcf * Changed contain in test.yml test.liftef.vcf * Run prittier * Going back to previous version of test.yml * downgrading picard to 2.26.10 from 2.26.11 * Update modules/picard/liftovervcf/main.nf Co-authored-by: Sateesh Peri <33637490+sateeshperi@users.noreply.github.com> * Update modules/picard/liftovervcf/main.nf Print available memory Co-authored-by: Sateesh Peri <33637490+sateeshperi@users.noreply.github.com> * Output from .vcf to .vcf.gz * Added spaces to align emit * Update modules/picard/liftovervcf/meta.yml Co-authored-by: Sateesh Peri <33637490+sateeshperi@users.noreply.github.com> * Update modules/picard/liftovervcf/meta.yml Co-authored-by: Sateesh Peri <33637490+sateeshperi@users.noreply.github.com> * Update modules/picard/liftovervcf/meta.yml Co-authored-by: Sateesh Peri <33637490+sateeshperi@users.noreply.github.com> * Removing md5sum test Co-authored-by: jemten <jemten@users.noreply.github.com> Co-authored-by: Sateesh Peri <33637490+sateeshperi@users.noreply.github.com> Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com> 2022-04-07 11:50:58 +00:00			`- name: picard liftovervcf test_picard_liftovervcf`
			`command: nextflow run tests/modules/picard/liftovervcf -entry test_picard_liftovervcf -c tests/config/nextflow.config`
			`tags:`
			`- picard/liftovervcf`
			`- picard`
			`files:`
			`- path: output/picard/test.lifted.vcf.gz`
			`contains:`
			`- "chr22"`
			`- path: output/picard/test.unlifted.vcf.gz`
			`- path: output/picard/versions.yml`