2021-02-02 08:14:00 +00:00
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- name: Run bcftools filter test workflow
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command: nextflow run ./tests/software/bcftools/ -profile docker -entry test_bcftools_filter -c tests/config/nextflow.config
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tags:
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- bcftools
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- bcftools_filter
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files:
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- path: output/bcftools/test.vcf.gz
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2021-02-02 09:19:34 +00:00
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md5sum: 16947ce72a127938d881113a1e6e696b
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2021-02-02 08:14:00 +00:00
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- name: Run bcftools stats test workflow
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command: nextflow run ./tests/software/bcftools/ -profile docker -entry test_bcftools_stats -c tests/config/nextflow.config
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tags:
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- bcftools
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- bcftools_stats
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files:
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- path: output/bcftools/test.bcftools_stats.txt
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md5sum: abfc6a90f84e24b2cc7e92cbce06200a
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- name: Run bcftools bgzip test workflow
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command: nextflow run ./tests/software/bcftools/ -profile docker -entry test_bcftools_bgzip -c tests/config/nextflow.config
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tags:
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- bcftools
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- bcftools_bgzip
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files:
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- path: output/bcftools/test.vcf.gz
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md5sum: eb75ae1f08a1884f8edc59ed423471a2
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- name: Run bcftools tabix test workflow
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command: nextflow run ./tests/software/bcftools/ -profile docker -entry test_bcftools_tabix -c tests/config/nextflow.config
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tags:
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- bcftools
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- bcftools_tabix
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files:
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- path: output/bcftools/test.vcf.gz.tbi
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md5sum: 06d52177f819730dd409157914534e8d
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- name: Run bcftools consensus test workflow
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command: nextflow run ./tests/software/bcftools/ -profile docker -entry test_bcftools_consensus -c tests/config/nextflow.config
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tags:
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- bcftools
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- bcftools_consensus
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files:
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- path: output/bcftools/test.vcf.gz
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md5sum: eb75ae1f08a1884f8edc59ed423471a2
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- path: output/bcftools/test.vcf.gz.tbi
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2021-02-02 08:57:55 +00:00
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md5sum: 06d52177f819730dd409157914534e8d
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2021-02-02 08:14:00 +00:00
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- path: output/bcftools/test.fa
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md5sum: c9e7ac4537756a0b33bcf17117f9a065
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2021-02-02 09:50:45 +00:00
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- name: Run bcftools isec test workflow
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command: nextflow run ./tests/software/bcftools/ -profile docker -entry test_bcftools_isec -c tests/config/nextflow.config
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tags:
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- bcftools
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- bcftools_isec
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files:
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- path: output/bcftools/test1.vcf.gz
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md5sum: eb75ae1f08a1884f8edc59ed423471a2
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- path: output/bcftools/test1.vcf.gz.tbi
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md5sum: 06d52177f819730dd409157914534e8d
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- path: output/bcftools/test2.vcf.gz
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md5sum: eb75ae1f08a1884f8edc59ed423471a2
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- path: output/bcftools/test2.vcf.gz.tbi
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md5sum: 06d52177f819730dd409157914534e8d
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- path: output/bcftools/test3.vcf.gz
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md5sum: eb75ae1f08a1884f8edc59ed423471a2
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- path: output/bcftools/test/0000.vcf.gz
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md5sum: 20bd741594f456c48e1928f07f0be342
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- path: output/bcftools/test/0000.vcf.gz.tbi
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md5sum: d4357a62c60df6abcb5cc806b4681dff
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- path: output/bcftools/test/0001.vcf.gz
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md5sum: 20bd741594f456c48e1928f07f0be342
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- path: output/bcftools/test/0001.vcf.gz.tbi
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md5sum: d4357a62c60df6abcb5cc806b4681dff
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- path: output/bcftools/test/0002.vcf.gz
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md5sum: 20bd741594f456c48e1928f07f0be342
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- path: output/bcftools/test/0002.vcf.gz.tbi
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md5sum: d4357a62c60df6abcb5cc806b4681dff
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- path: md5 output/bcftools/test/README.txt
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md5sum: 9a3a041e63a18e0ad41abab96e2c5f73
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- path: md5 output/bcftools/test/sites.txt
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md5sum: 01bb949ed7825ecf692bf0640e363647
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