nf-core_modules/tests/modules/genmap/index/test.yml

- name: genmap index test_genmap_index
  command: nextflow run tests/modules/genmap/index -entry test_genmap_index -c tests/config/nextflow.config
  tags:
    - genmap
    - genmap/index
  files:
    - path: output/genmap/genmap/index.ids.concat
      md5sum: da6caa25f62c5407ccdfbcce1fa92408
    - path: output/genmap/genmap/index.ids.limits
      md5sum: f82636c5da188aec131d3a809473eff1
    - path: output/genmap/genmap/index.info.concat
      md5sum: 8ba5273aa9e58722bf45b9cc39fc6bfe
    - path: output/genmap/genmap/index.info.limits
      md5sum: 3522f2811f4ddf04598809fc84a1459e
    - path: output/genmap/genmap/index.lf.drp
      md5sum: dd85d6a23af2c7adf2695658e3056c08
    - path: output/genmap/genmap/index.lf.drp.sbl
      md5sum: f1d3ff8443297732862df21dc4e57262
    - path: output/genmap/genmap/index.lf.drs
      md5sum: 93b885adfe0da089cdf634904fd59f71
    - path: output/genmap/genmap/index.lf.drv
      md5sum: e06b605496bd91b32afa3c4f56d934ac
    - path: output/genmap/genmap/index.lf.drv.sbl
      md5sum: 8dd6bb7329a71449b0a1b292b5999164
    - path: output/genmap/genmap/index.lf.pst
      md5sum: e8daba34298e99e42942435286f9b3f0
    - path: output/genmap/genmap/index.rev.lf.drp
      md5sum: 5d9107e3aeec0721553dd661d4365fef
    - path: output/genmap/genmap/index.rev.lf.drp.sbl
      md5sum: f1d3ff8443297732862df21dc4e57262
    - path: output/genmap/genmap/index.rev.lf.drs
      md5sum: 93b885adfe0da089cdf634904fd59f71
    - path: output/genmap/genmap/index.rev.lf.drv
      md5sum: df7e795edc0a034577a9d2599fe8cfeb
    - path: output/genmap/genmap/index.rev.lf.drv.sbl
      md5sum: 8dd6bb7329a71449b0a1b292b5999164
    - path: output/genmap/genmap/index.rev.lf.pst
      md5sum: e8daba34298e99e42942435286f9b3f0
    - path: output/genmap/genmap/index.sa.ind
      md5sum: e21e5c7ce887cc8e3d0fa44ab1019cab
    - path: output/genmap/genmap/index.sa.len
      md5sum: 5dfc20cfe8ed9892451461a8d402f51c
    - path: output/genmap/genmap/index.sa.val
      md5sum: 400ee7f2fe93b2000ae3a5da5e509730
    - path: output/genmap/genmap/index.txt.concat
      md5sum: b4303962e0c176107945f3405370e6ae
    - path: output/genmap/genmap/index.txt.limits
      md5sum: 4480a068db603e4c9a27bc4fa9ceaf14
add genmap/mappability (#509) * add genmap/mappability * Add index module. Remove -w parameter from mappability module. * change the output of genmap/index * fix the lint error which can not handle stageAs. * Apply suggestions from code review * Update main.nf * Update test.yml * Update main.nf * Update test.yml * Update tests/software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-05-25 21:12:10 +00:00			`- name: genmap index test_genmap_index`
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml 2021-07-07 09:10:18 +00:00			`command: nextflow run tests/modules/genmap/index -entry test_genmap_index -c tests/config/nextflow.config`
add genmap/mappability (#509) * add genmap/mappability * Add index module. Remove -w parameter from mappability module. * change the output of genmap/index * fix the lint error which can not handle stageAs. * Apply suggestions from code review * Update main.nf * Update test.yml * Update main.nf * Update test.yml * Update tests/software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-05-25 21:12:10 +00:00			`tags:`
			`- genmap`
			`- genmap/index`
			`files:`
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules 2021-09-28 05:56:27 +00:00			`- path: output/genmap/genmap/index.ids.concat`
add genmap/mappability (#509) * add genmap/mappability * Add index module. Remove -w parameter from mappability module. * change the output of genmap/index * fix the lint error which can not handle stageAs. * Apply suggestions from code review * Update main.nf * Update test.yml * Update main.nf * Update test.yml * Update tests/software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-05-25 21:12:10 +00:00			`md5sum: da6caa25f62c5407ccdfbcce1fa92408`
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules 2021-09-28 05:56:27 +00:00			`- path: output/genmap/genmap/index.ids.limits`
add genmap/mappability (#509) * add genmap/mappability * Add index module. Remove -w parameter from mappability module. * change the output of genmap/index * fix the lint error which can not handle stageAs. * Apply suggestions from code review * Update main.nf * Update test.yml * Update main.nf * Update test.yml * Update tests/software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-05-25 21:12:10 +00:00			`md5sum: f82636c5da188aec131d3a809473eff1`
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules 2021-09-28 05:56:27 +00:00			`- path: output/genmap/genmap/index.info.concat`
add genmap/mappability (#509) * add genmap/mappability * Add index module. Remove -w parameter from mappability module. * change the output of genmap/index * fix the lint error which can not handle stageAs. * Apply suggestions from code review * Update main.nf * Update test.yml * Update main.nf * Update test.yml * Update tests/software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-05-25 21:12:10 +00:00			`md5sum: 8ba5273aa9e58722bf45b9cc39fc6bfe`
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules 2021-09-28 05:56:27 +00:00			`- path: output/genmap/genmap/index.info.limits`
add genmap/mappability (#509) * add genmap/mappability * Add index module. Remove -w parameter from mappability module. * change the output of genmap/index * fix the lint error which can not handle stageAs. * Apply suggestions from code review * Update main.nf * Update test.yml * Update main.nf * Update test.yml * Update tests/software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-05-25 21:12:10 +00:00			`md5sum: 3522f2811f4ddf04598809fc84a1459e`
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules 2021-09-28 05:56:27 +00:00			`- path: output/genmap/genmap/index.lf.drp`
add genmap/mappability (#509) * add genmap/mappability * Add index module. Remove -w parameter from mappability module. * change the output of genmap/index * fix the lint error which can not handle stageAs. * Apply suggestions from code review * Update main.nf * Update test.yml * Update main.nf * Update test.yml * Update tests/software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-05-25 21:12:10 +00:00			`md5sum: dd85d6a23af2c7adf2695658e3056c08`
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules 2021-09-28 05:56:27 +00:00			`- path: output/genmap/genmap/index.lf.drp.sbl`
add genmap/mappability (#509) * add genmap/mappability * Add index module. Remove -w parameter from mappability module. * change the output of genmap/index * fix the lint error which can not handle stageAs. * Apply suggestions from code review * Update main.nf * Update test.yml * Update main.nf * Update test.yml * Update tests/software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-05-25 21:12:10 +00:00			`md5sum: f1d3ff8443297732862df21dc4e57262`
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules 2021-09-28 05:56:27 +00:00			`- path: output/genmap/genmap/index.lf.drs`
add genmap/mappability (#509) * add genmap/mappability * Add index module. Remove -w parameter from mappability module. * change the output of genmap/index * fix the lint error which can not handle stageAs. * Apply suggestions from code review * Update main.nf * Update test.yml * Update main.nf * Update test.yml * Update tests/software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-05-25 21:12:10 +00:00			`md5sum: 93b885adfe0da089cdf634904fd59f71`
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules 2021-09-28 05:56:27 +00:00			`- path: output/genmap/genmap/index.lf.drv`
add genmap/mappability (#509) * add genmap/mappability * Add index module. Remove -w parameter from mappability module. * change the output of genmap/index * fix the lint error which can not handle stageAs. * Apply suggestions from code review * Update main.nf * Update test.yml * Update main.nf * Update test.yml * Update tests/software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-05-25 21:12:10 +00:00			`md5sum: e06b605496bd91b32afa3c4f56d934ac`
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules 2021-09-28 05:56:27 +00:00			`- path: output/genmap/genmap/index.lf.drv.sbl`
add genmap/mappability (#509) * add genmap/mappability * Add index module. Remove -w parameter from mappability module. * change the output of genmap/index * fix the lint error which can not handle stageAs. * Apply suggestions from code review * Update main.nf * Update test.yml * Update main.nf * Update test.yml * Update tests/software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-05-25 21:12:10 +00:00			`md5sum: 8dd6bb7329a71449b0a1b292b5999164`
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules 2021-09-28 05:56:27 +00:00			`- path: output/genmap/genmap/index.lf.pst`
add genmap/mappability (#509) * add genmap/mappability * Add index module. Remove -w parameter from mappability module. * change the output of genmap/index * fix the lint error which can not handle stageAs. * Apply suggestions from code review * Update main.nf * Update test.yml * Update main.nf * Update test.yml * Update tests/software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-05-25 21:12:10 +00:00			`md5sum: e8daba34298e99e42942435286f9b3f0`
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules 2021-09-28 05:56:27 +00:00			`- path: output/genmap/genmap/index.rev.lf.drp`
add genmap/mappability (#509) * add genmap/mappability * Add index module. Remove -w parameter from mappability module. * change the output of genmap/index * fix the lint error which can not handle stageAs. * Apply suggestions from code review * Update main.nf * Update test.yml * Update main.nf * Update test.yml * Update tests/software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-05-25 21:12:10 +00:00			`md5sum: 5d9107e3aeec0721553dd661d4365fef`
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules 2021-09-28 05:56:27 +00:00			`- path: output/genmap/genmap/index.rev.lf.drp.sbl`
add genmap/mappability (#509) * add genmap/mappability * Add index module. Remove -w parameter from mappability module. * change the output of genmap/index * fix the lint error which can not handle stageAs. * Apply suggestions from code review * Update main.nf * Update test.yml * Update main.nf * Update test.yml * Update tests/software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-05-25 21:12:10 +00:00			`md5sum: f1d3ff8443297732862df21dc4e57262`
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules 2021-09-28 05:56:27 +00:00			`- path: output/genmap/genmap/index.rev.lf.drs`
add genmap/mappability (#509) * add genmap/mappability * Add index module. Remove -w parameter from mappability module. * change the output of genmap/index * fix the lint error which can not handle stageAs. * Apply suggestions from code review * Update main.nf * Update test.yml * Update main.nf * Update test.yml * Update tests/software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-05-25 21:12:10 +00:00			`md5sum: 93b885adfe0da089cdf634904fd59f71`
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules 2021-09-28 05:56:27 +00:00			`- path: output/genmap/genmap/index.rev.lf.drv`
add genmap/mappability (#509) * add genmap/mappability * Add index module. Remove -w parameter from mappability module. * change the output of genmap/index * fix the lint error which can not handle stageAs. * Apply suggestions from code review * Update main.nf * Update test.yml * Update main.nf * Update test.yml * Update tests/software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-05-25 21:12:10 +00:00			`md5sum: df7e795edc0a034577a9d2599fe8cfeb`
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules 2021-09-28 05:56:27 +00:00			`- path: output/genmap/genmap/index.rev.lf.drv.sbl`
add genmap/mappability (#509) * add genmap/mappability * Add index module. Remove -w parameter from mappability module. * change the output of genmap/index * fix the lint error which can not handle stageAs. * Apply suggestions from code review * Update main.nf * Update test.yml * Update main.nf * Update test.yml * Update tests/software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-05-25 21:12:10 +00:00			`md5sum: 8dd6bb7329a71449b0a1b292b5999164`
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules 2021-09-28 05:56:27 +00:00			`- path: output/genmap/genmap/index.rev.lf.pst`
add genmap/mappability (#509) * add genmap/mappability * Add index module. Remove -w parameter from mappability module. * change the output of genmap/index * fix the lint error which can not handle stageAs. * Apply suggestions from code review * Update main.nf * Update test.yml * Update main.nf * Update test.yml * Update tests/software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-05-25 21:12:10 +00:00			`md5sum: e8daba34298e99e42942435286f9b3f0`
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules 2021-09-28 05:56:27 +00:00			`- path: output/genmap/genmap/index.sa.ind`
add genmap/mappability (#509) * add genmap/mappability * Add index module. Remove -w parameter from mappability module. * change the output of genmap/index * fix the lint error which can not handle stageAs. * Apply suggestions from code review * Update main.nf * Update test.yml * Update main.nf * Update test.yml * Update tests/software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-05-25 21:12:10 +00:00			`md5sum: e21e5c7ce887cc8e3d0fa44ab1019cab`
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules 2021-09-28 05:56:27 +00:00			`- path: output/genmap/genmap/index.sa.len`
add genmap/mappability (#509) * add genmap/mappability * Add index module. Remove -w parameter from mappability module. * change the output of genmap/index * fix the lint error which can not handle stageAs. * Apply suggestions from code review * Update main.nf * Update test.yml * Update main.nf * Update test.yml * Update tests/software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-05-25 21:12:10 +00:00			`md5sum: 5dfc20cfe8ed9892451461a8d402f51c`
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules 2021-09-28 05:56:27 +00:00			`- path: output/genmap/genmap/index.sa.val`
add genmap/mappability (#509) * add genmap/mappability * Add index module. Remove -w parameter from mappability module. * change the output of genmap/index * fix the lint error which can not handle stageAs. * Apply suggestions from code review * Update main.nf * Update test.yml * Update main.nf * Update test.yml * Update tests/software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-05-25 21:12:10 +00:00			`md5sum: 400ee7f2fe93b2000ae3a5da5e509730`
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules 2021-09-28 05:56:27 +00:00			`- path: output/genmap/genmap/index.txt.concat`
add genmap/mappability (#509) * add genmap/mappability * Add index module. Remove -w parameter from mappability module. * change the output of genmap/index * fix the lint error which can not handle stageAs. * Apply suggestions from code review * Update main.nf * Update test.yml * Update main.nf * Update test.yml * Update tests/software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-05-25 21:12:10 +00:00			`md5sum: b4303962e0c176107945f3405370e6ae`
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules 2021-09-28 05:56:27 +00:00			`- path: output/genmap/genmap/index.txt.limits`
add genmap/mappability (#509) * add genmap/mappability * Add index module. Remove -w parameter from mappability module. * change the output of genmap/index * fix the lint error which can not handle stageAs. * Apply suggestions from code review * Update main.nf * Update test.yml * Update main.nf * Update test.yml * Update tests/software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-05-25 21:12:10 +00:00			`md5sum: 4480a068db603e4c9a27bc4fa9ceaf14`