2020-11-25 01:55:52 +00:00
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- name: Run samtools flagstat test workflow
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command: nextflow run ./tests/software/samtools/ -profile docker -entry test_samtools_flagstat -c tests/config/nextflow.config
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tags:
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- samtools
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- samtools_flagstat
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files:
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- path: output/samtools/test.paired_end.sorted.bam.flagstat
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md5sum: 80590621c74f5ee43ada20d010a3837f
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2020-11-25 02:01:05 +00:00
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- name: Run samtools idxstats test workflow
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command: nextflow run ./tests/software/samtools/ -profile docker -entry test_samtools_idxstats -c tests/config/nextflow.config
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tags:
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- samtools
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- samtools_idxstats
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files:
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- path: output/samtools/test.paired_end.sorted.bam.idxstats
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md5sum: 3bee8b7d55e412da2b3816c5a18d60d5
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2020-11-25 02:08:15 +00:00
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- name: Run samtools index test workflow
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command: nextflow run ./tests/software/samtools/ -profile docker -entry test_samtools_index -c tests/config/nextflow.config
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tags:
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- samtools
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- samtools_index
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files:
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- path: output/samtools/test.paired_end.sorted.bam.bai
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md5sum: 67338c2995eae82c849830ca55aa7bd1
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2020-11-25 02:14:21 +00:00
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- name: Run samtools sort test workflow
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command: nextflow run ./tests/software/samtools/ -profile docker -entry test_samtools_sort -c tests/config/nextflow.config
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tags:
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- samtools
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- samtools_sort
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files:
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- path: output/samtools/test.bam
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md5sum: a41bfadacd2eeef1d31e05c135cc4f4e
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2020-11-25 02:21:45 +00:00
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- name: Run samtools stats test workflow
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command: nextflow run ./tests/software/samtools/ -profile docker -entry test_samtools_stats -c tests/config/nextflow.config
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tags:
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- samtools
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- samtools_stats
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files:
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- path: output/samtools/test.paired_end.sorted.bam.stats
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md5sum: 06c183864d6e47ab89b0650cae831a93
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